Data input
Column
BayesTraits Header
Column
Restrictions
Reconstructions / Fossilisations
Priors
Tree
MCMC traces
Column
ML Chain
This plot shows 10,000 random iterations of the Maximum Likelihood chains
Column
ML Chain Density
ML Chain Violins
MCMC Diagnostics
Column
Effective Sampling Sizes
Mean Acceptance Rates
Total Average Acceptance Rates
Column
Maximum Likelohood Autocorrelation
Root State & Rate Estimates
Row
Root State
Root state probabilities for each run
Transition Rates Network
Mean transition rates
Row
Transition Rates Densities
Density distributions of rate transition estimates. Line show mean rates.
Node Reconstructions
Column
Node Reconstruction / Fossilisation
Column
Phylogeny
RevJ Model Reduction
Row
Reverse Jump Model Sampling
No Reverse Jump usedReverse Jump Model Ranking - Table
No Reverse Jump usedReverse Jump Model Ranking - Barchart
No Reverse Jump usedRow
% Non-zero transitions
No Reverse Jump usedThree most frequently sampled model
No Reverse Jump usedModel Comparison - LogBF
Column
Stepping Stone Sampler
No stepping stones sampler setLog Marginal Likelihood
No stepping stones sampler setLog Bayes Factor
No stepping stones sampler setColumn
Stone Power
No stepping stones sampler setStone Marginal Likelihood
No stepping stones sampler setRunning Marginal Likelihood
No stepping stones sampler set